The supplied material is a bibliography covering research on rubella virus, congenital rubella syndrome and related virus-entry mechanisms. The references span the virus’s structure, receptors, cell entry, placental and fetal infection, host responses, experimental models and molecular methods. It also includes comparative work on measles virus, respiratory syncytial virus, SARS-associated coronavirus and other pathogens, as well as tools used to study viral infection.
Rubella virus and congenital infection
Several references address the global burden of rubella and congenital rubella syndrome, including worldwide progress from 2012 to 2022 and estimates covering 1996–2019. Other studies examine placental pathology, the distribution of rubella antigen in fatal congenital rubella syndrome, fetal disease and possible mechanisms of cataract formation.
Virus structure and cell entry
Research cited in the bibliography describes the oligomerization of rubella virus structural proteins, the virus’s three-dimensional helical structure and the crystal structure of its E1 protein. Other studies investigate the cellular receptor for rubella virus and the roles of host-cell sphingomyelin, cholesterol, calcium and early endosomes during viral entry.
Experimental models and molecular methods
The references include work using airway and placental models, trophoblast stem cells, organoids, cell lines, pseudotype viruses, CRISPR screening, proteomics and real-time reverse-transcription PCR. Together, these studies provide experimental approaches for investigating viral tropism, host–virus interactions, viral replication and congenital infection.
References
- Hobman, T. C. Rubella Virus, 7th edn (Wolters Kluwer, 2021).
- Cong, H., Jiang, Y. & Tien, P. Identification of the myelin oligodendrocyte glycoprotein as a cellular receptor for rubella virus. J. Virol. 85, 11038–11047 (2011). Article · PubMed · PubMed Central
- Ou, A. C. et al. Progress toward rubella and congenital rubella syndrome elimination—worldwide, 2012–2022. Morb. Mortal. Wkly. Rep. 73, 162–167 (2024). Article
- Vynnycky, E. et al. Estimates of the global burden of congenital rubella syndrome, 1996–2019. Int. J. Infect. Dis. 137, 149–156 (2023). Article · PubMed · PubMed Central
- Garcia, A. G., Marques, R. L., Lobato, Y. Y., Fonseca, M. E. & Wigg, M. D. Placental pathology in congenital rubella. Placenta 6, 281–295 (1985). Article · PubMed
- Lazar, M. et al. Immunolocalization and distribution of rubella antigen in fatal congenital rubella syndrome. eBioMedicine 3, 86–92 (2016). Article · PubMed
- Töndury, G. & Smith, D. W. Fetal rubella pathology. J. Pediatr. 68, 867–879 (1966). Article · PubMed
- Nguyen, T. V., Pham, V. H. & Abe, K. Pathogenesis of congenital rubella virus infection in human fetuses: viral infection in the ciliary body could play an important role in cataractogenesis. eBioMedicine 2, 59–63 (2015). Article · PubMed
- Baron, M. D. & Forsell, K. Oligomerization of the structural proteins of rubella virus. Virology 185, 811–819 (1991). Article · PubMed
- Battisti, A. J. et al. Cryo-electron tomography of rubella virus. J. Virol. 86, 11078–11085 (2012). Article · PubMed · PubMed Central
- Mangala Prasad, V., Klose, T. & Rossmann, M. G. Assembly, maturation and three-dimensional helical structure of the teratogenic rubella virus. PLoS Pathog. 13, e1006377 (2017). Article · PubMed · PubMed Central
- Mori, Y. et al. Membrane sphingomyelin in host cells is essential for nucleocapsid penetration into the cytoplasm after hemifusion during rubella virus entry. mBio 13, e0169822 (2022). Article · PubMed · PubMed Central
- Lam, S. S. et al. Directed evolution of APEX2 for electron microscopy and proximity labeling. Nat. Methods 12, 51–54 (2015). Article · PubMed
- Keeble, A. H. et al. DogCatcher allows loop-friendly protein–protein ligation. Cell Chem. Biol. 29, 339–350 (2022). Article · PubMed
- Sakata, M. et al. Short self-interacting N-terminal region of rubella virus capsid protein is essential for cooperative actions of capsid and nonstructural p150 proteins. J. Virol. 88, 11187–11198 (2014). Article · PubMed · PubMed Central
- Sakata, M. et al. Analysis of VSV pseudotype virus infection mediated by rubella virus envelope proteins. Sci. Rep. 7, 11607 (2017). Article · PubMed
- Garcin, D., Latorre, P. & Kolakofsky, D. Sendai virus C proteins counteract the interferon-mediated induction of an antiviral state. J. Virol. 73, 6559–6565 (1999). Article · PubMed
- Otsuki, N. et al. Both sphingomyelin and cholesterol in the host cell membrane are essential for rubella virus entry. J. Virol. 92, e01130-01117 (2017).
- Reymond, N. et al. Nectin4/PRR4, a new afadin-associated member of the nectin family that trans-interacts with nectin1/PRR1 through V domain interaction. J. Biol. Chem. 276, 43205–43215 (2001). Article · PubMed
- Challita-Eid, P. M. et al. Enfortumab vedotin antibody–drug conjugate targeting nectin-4 is a highly potent therapeutic agent in multiple preclinical cancer models. Cancer Res. 76, 3003–3013 (2016). Article · PubMed
- Hobman, T. C., Lundstrom, M. L. & Gillam, S. Processing and intracellular transport of rubella virus structural proteins in COS cells. Virology 178, 122–133 (1990). Article · PubMed · PubMed Central
- Karlsson, M. et al. A single-cell type transcriptomics map of human tissues. Sci. Adv. 7, eabh2169 (2021). Article · PubMed · PubMed Central
- Mühlebach, M. D. et al. Adherens junction protein nectin-4 is the epithelial receptor for measles virus. Nature 480, 530–533 (2011). Article · PubMed · PubMed Central
- Noyce, R. S. et al. Tumor cell marker PVRL4 (nectin 4) is an epithelial cell receptor for measles virus. PLoS Pathog. 7, e1002240 (2011). Article · PubMed · PubMed Central
- Frenzke, M. et al. Nectin-4-dependent measles virus spread to the cynomolgus monkey tracheal epithelium: role of infected immune cells infiltrating the lamina propria. J. Virol. 87, 2526–2534 (2013). Article · PubMed
- Leonard, V. H. et al. Measles virus blind to its epithelial cell receptor remains virulent in rhesus monkeys but cannot cross the airway epithelium and is not shed. J. Clin. Invest. 118, 2448–2458 (2008). PubMed · PubMed Central
- Prytherch, Z. et al. Tissue-specific stem cell differentiation in an in vitro airway model. Macromol. Biosci. 11, 1467–1477 (2011). Article · PubMed
- Okae, H. et al. Derivation of human trophoblast stem cells. Cell Stem Cell 22, 50–63 (2018). Article · PubMed
- Hori, T. et al. Trophoblast stem cell-based organoid models of the human placental barrier. Nat. Commun. 15, 962 (2024). Article · PubMed · PubMed Central
- Samanta, D. & Almo, S. C. Nectin family of cell-adhesion molecules: structural and molecular aspects of function and specificity. Cell. Mol. Life Sci. 72, 645–658 (2015). Article · PubMed
- DuBois, R. M. et al. Functional and evolutionary insight from the crystal structure of rubella virus protein E1. Nature 493, 552–556 (2013). Article · PubMed
- Dubé, M., Etienne, L., Fels, M. & Kielian, M. Calcium-dependent rubella virus fusion occurs in early endosomes. J. Virol. 90, 6303–6313 (2016). Article · PubMed · PubMed Central
- Ludlow, M. et al. Measles virus infection of epithelial cells in the macaque upper respiratory tract is mediated by subepithelial immune cells. J. Virol. 87, 4033–4042 (2013). Article · PubMed · PubMed Central
- Singh, B. K. et al. Cell-to-cell contact and nectin-4 govern spread of measles virus from primary human myeloid cells to primary human airway epithelial cells. J. Virol. 90, 6808–6817 (2016). Article · PubMed · PubMed Central
- Megli, C. J. & Coyne, C. B. Infections at the maternal–fetal interface: an overview of pathogenesis and defence. Nat. Rev. Microbiol. 20, 67–82 (2022). Article · PubMed
- Hashimoto, R. et al. Human iPS cell-derived respiratory organoids as a model for respiratory syncytial virus infection. Life Sci. Alliance 8, e202402837 (2025). Article · PubMed · PubMed Central
- Lopez, H. et al. Novel model of placental tissue explants infected by cytomegalovirus reveals different permissiveness in early and term placentae and inhibition of indoleamine 2,3-dioxygenase activity. Placenta 32, 522–530 (2011). Article · PubMed
- Platt, D. J. et al. Zika virus-related neurotropic flaviviruses infect human placental explants and cause fetal demise in mice. Sci. Transl. Med. 10, eaao7090 (2018). Article · PubMed
- Umino, Y., Sato, T. A., Katow, S., Matsuno, T. & Sugiura, A. Monoclonal antibodies directed to E1 glycoprotein of rubella virus. Arch. Virol. 83, 33–42 (1985). Article · PubMed
- yamaoka, y. et al. Characterization and utilization of disulfide-bonded SARS-CoV-2 receptor binding domain of spike protein synthesized by wheat germ cell-free production system. Viruses 14, 1461 (2022). Article · PubMed
- Shirato, K. et al. Differences in neutralizing antigenicity between laboratory and clinical isolates of HCoV-229E isolated in Japan in 2004–2008 depend on the S1 region sequence of the spike protein. J. Gen. Virol. 93, 1908–1917 (2012). Article · PubMed
- Sanjana, N. E., Shalem, O. & Zhang, F. Improved vectors and genome-wide libraries for CRISPR screening. Nat. Methods 11, 783–784 (2014). Article · PubMed
- Katoh, H. et al. The R2TP complex regulates paramyxovirus RNA synthesis. PLoS Pathog. 15, e1007749 (2019). Article · PubMed
- Hirokawa, T., Boon-Chieng, S. & Mitaku, S. SOSUI: classification and secondary structure prediction system for membrane proteins. Bioinformatics 14, 378–379 (1998). Article · PubMed
- Kumar, M. et al. ELM—the Eukaryotic Linear Motif resource—2024 update. Nucleic Acids Res. 52, D442–D455 (2024). Article · PubMed
- Okura, T. et al. MARCH8 restricts RSV replication by promoting cellular apoptosis through ubiquitin-mediated proteolysis of viral SH protein. Viruses 16, 1935 (2024). Article · PubMed
- Takahashi, T., Ueno, S., Sugiura, Y., Shimizu, K. & Kamitani, W. Establishment of a new reverse genetics system for respiratory syncytial virus under the control of RNA polymerase II. Microbiol. Immunol. 67, 413–421 (2023). PubMed
- Shirato, K., Kakizaki, M., Tomita, Y., Kawase, M. & Takeda, M. Detection of the ORF1 gene is an indicator of the possible isolation of severe acute respiratory syndrome coronavirus 2. Pathogens 11, 302 (2022). Article · PubMed
- Shirogane, Y. et al. Epithelial–mesenchymal transition abolishes the susceptibility of polarized epithelial cell lines to measles virus. J. Biol. Chem. 285, 20882–20890 (2010). Article · PubMed
- Epstein, M. A. & Barr, Y. M. Characteristics and mode of growth of tissue culture strain (EB1) of human lymphoblasts from Burkitt’s lymphoma. J. Natl Cancer Inst. 34, 231–240 (1965). Article · PubMed
- Fogh, J., Fogh, J. M. & Orfeo, T. One hundred and twenty-seven cultured human tumor cell lines producing tumors in nude mice. J. Natl Cancer Inst. 59, 221–226 (1977). Article · PubMed
- Brower, M., Carney, D. N., Oie, H. K., Gazdar, A. F. & Minna, J. D. Growth of cell lines and clinical specimens of human non-small cell lung cancer in a serum-free defined medium. Cancer Res. 46, 798–806 (1986). PubMed
- Rappsilber, J., Mann, M. & Ishihama, Y. Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips. Nat. Protoc. 2, 1896–1906 (2007). Article · PubMed
- Binder, J. X. et al. COMPARTMENTS: unification and visualization of protein subcellular localization evidence. Database 2014, bau012 (2014). Article · PubMed
- Barretina, J. et al. The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity. Nature 483, 603–607 (2012). Article · PubMed
- Jeong, H.-H., Kim, S. Y., Rousseaux, M. W. C., Zoghbi, H. Y. & Liu, Z. CRISPRcloud: a secure cloud-based pipeline for CRISPR pooled screen deconvolution. Bioinformatics 33, 2963–2965 (2017). Article · PubMed
- Sakata, M., Komase, K. & Nakayama, T. Histidine at position 1042 of the p150 region of a KRT live attenuated rubella vaccine strain is responsible for the temperature sensitivity. Vaccine 27, 234–242 (2009). Article · PubMed
- Okamoto, K., Fujii, K. & Komase, K. Development of a novel TaqMan real-time PCR assay for detecting rubella virus RNA. J. Virol. Methods 168, 267–271 (2010). Article · PubMed
- Emery, S. L. et al. Real-time reverse transcription-polymerase chain reaction assay for SARS-associated coronavirus. Emerg. Infect. Dis. 10, 311–316 (2004). Article · PubMed
- Sugimoto, S. et al. Comparison of mutations in human parainfluenza viruses during passage in primary human bronchial/tracheal epithelial air-liquid interface cultures and cell lines. Microbiol. Spectr. 12, e0116424 (2024). Article · PubMed
- Okuda, S. et al. jPOST environment accelerates the reuse and reanalysis of public proteome mass spectrometry data. Nucleic Acids Res. 53, D462–D467 (2025). Article · PubMed
Source: www.nature.com


